Single Cell Phenomics Center

See every cell.
Understand the system.

High-throughput microscopy meets flow cytometry and artificial intelligence—opening a new window into cellular heterogeneity.

Explore capabilities ↓
Digital progression from brightfield cell images to multichannel fluorescent phenotypes and computational features

Overview

A cornerstone in the multi-omic era.

The Single Cell Phenomics Center brings advanced image-based flow cytometry to Iowa State researchers and external collaborators. The technology works like a high-throughput microscope, imaging thousands of cells in seconds while collecting brightfield, side scatter, and fluorescence data.

20× / 40× / 60×Imaging objectives
ThousandsOf cells imaged in seconds
120 × 200 μmMaximum cell dimensions
AI-readyImage analysis pipelines
Diagram combining flow cytometry and microscopy01 · The platform

Two strengths, one instrument

Flow cytometry meets fluorescence microscopy.

Quantitative flow data is paired with detailed cellular images in a single platform. Samples can be viewed in brightfield, side scatter, and across a wide fluorescent palette—with extended depth of field when the research question calls for it.

ImageStream system overview

Research applications

Built for questions across disciplines.

Image-based flow cytometry research applications
  • Cell signaling & co-localization
  • Cell cycle & mitosis
  • Internalization & phagocytosis
  • Rare cell detection
  • Extracellular vesicles
  • Bacteria & viruses

Artificial intelligence

From images
to insight.

Image outputs integrate naturally with machine- and deep-learning approaches, enabling label-free classification and richer phenotypic discovery.

Convolutional neural network layersT-SNE visualization of label-free cell data

Selected publications

Research powered by image-based flow cytometry.

01

Zinc ion flux during mammalian sperm capacitation

Kerns et al., 2018 · Nature Communications

02

Compartmentalization of proteasome-interacting proteins during sperm capacitation

Zigo et al., 2019 · Scientific Reports

03

Relationship between sperm mitochondrial sheath length and boar fertility traits

Kerns et al., 2020 · Antioxidants

04

Sperm cohort-specific zinc signatures and capacitation-induced zinc flux

Kerns et al., 2020 · IJMS

Internal & external access

Bring your samples.
We’ll help reveal the story.

Services are available to Iowa State principal investigator labs and external stakeholders. Equipment scheduling and billing are managed through iLab.

Schedule through iLab ↗

Project inquiry

Is image-based flow cytometry right for your question?

Tell us about the cells or particles, approximate dimensions, available labels, desired measurements, sample count, and timeline. We can help assess fit before you schedule through iLab.

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